During the chase scene on the highway numerous cars are crashed and/or destroyed in the center of the highway and a large amount of wrecks litter the road so all traffic should have stopped and been completely backed up at that point, however as they start forward on the motorcycle, and subsequently backwards when they turn to avoid the agents, traffic is still flowing normally, like no wrecks had happened.
In the Freeway Chase, Morpheus stabs a sword into the side of the truck that he is standing on as he approaches Trinity and The Keymaker. In order to snatch The Keymaker from Trinity's bike, he placed it low down - near the wheels and stood on the hilt. Later on in the scene, when he's fighting agent Thompson he is struck to the ground, near the edge of the truck roof. He spots the sword which is now mere inches from the roof - close enough for him to grab while remaining hunched over the edge, which certainly would not have been possible in its previous location. Furthermore in the scenes leading up to this, the sword has vanished from the side of the truck, most noticeable when the camera pans around the entire vehicle.
At the beginning of the fight in the Merovingian's foyer, Neo stops his attackers' bullets and they fall to the floor. The fallen bullets disappear and reappear frequently throughout the sequence, most notably vanishing in the overhead shot (when Neo kicks the ponytailed man through the railing), but reappear moments later on the ground.
In the Nebudchanezzar, Link unplugs Morpheus from the Matrix. In the close-up we see Morpheus opening his eyes in the bottom of the screen. When we cut back to the two-shot, Morpheus still has his eyes closed and opens them up quite deliberately moments later.
When Neo first meets Seraph and they duel, they jump onto a table, and a container of chopsticks sitting on the table is knocked off the edge. A few seconds later, they jump to an adjacent table, but the container has reappeared in its original location on the first table, upright and with the chopsticks still inside.
In the highway chase scene, Trinity and The Keymaker jump onto a truck with motorcycles. When shot from above, Trinity holds The Keymaker in her right hand, but in the next shot which is shot from below the bridge, the Keymaker is behind her slightly to her left.
At the beginning of the freeway chase, after they come out of the parking garage, Trinity and Morpheus' car goes around a left turn. We then see the action from the twins' point of view, and during one shot the heroes' car is obviously stationary, parked diagonally against the sidewalk. It must be the heroes' car because no other car of that model is seen in the scene.
At the beginning of the movie, a security guard checks out in a scene with a set of lockers in the background. The next take shows him coming out of a building with a full office and large windows in the place of the lockers.
When Trinity is riding the motorcycle the wrong way along the highway, three police cars join from the off-ramp and travel along the side of the road immediately behind her. As Trinity swerves into traffic, an oncoming car moves right to avoid her and yet doesn't appear to hit a police car.
Further to the comment about some of the Smith clones not having Hugo Weaving's face pasted onto them, just after Neo does his back flip into two agents whilst kicking the two either side of him, just after he turns back around towards the camera, there is a very obvious stuntman standing just behind him who looks absolutely nothing like Agent Smith.
In the car chase scene, when Trinity is driving the cadillac, the Agent in the cop car slams into the driver's side of Trinity's car and the driver's side mirror is bent inwards. When Trinity drives the cadillac onto the exit ramp, the driver's side mirror is back in its normal position.
During the car chase, the twins shoot out most of the windows in the car that Trinity and Morpheus are driving in. But every time they cut to a shot of them inside of the car, the windows are intact and there is no shattered glass to be seen.
During the car chase, one of the Twins shoots at a car behind them to get it out of the way - the right side of the windscreen (as we look at it) is peppered with holes. From another angle, they disappear, only to reappear as it swerves away.
When Neo and the keeper are fighting on the middle bench, one by one the bowls get knocked off - the two on the far corners (left and right) reappear and disappear at least once. Likewise the pot on the right hand table with stick-like things in - that table's completely cleared at one point, but that pot reappears.
During the freeway chase scene the Cadillac gets slammed up against the wall and sparks start shooting from the side to show that the car is being scraped by the wall. However, in several quick shots after we see the car gets scraped against the wall, there are only bullet holes and no trace of scraping against the side of the car.
When the twin leaves the car that Trinity is driving, he is standing on the freeway by himself. You see a flat-bed truck, then a police car, then a red van pass him by. But when they show the shot ahead of him, the truck is still there, but the cop car and the red van are nowhere to be seen.
In the car chase scene when the Twin enters the car with Morpheus, Trinity and the keymaker the camera view changes between aerial shots and shots from in the car. In the aerial shots the road behind them is completely empty. From the shots in the car you can see several cars behind them through the windows.
In the scene of the freeway chase, where Trinity, Morpheus and the Keymaker are in one car on the right side of the freeway, there's a shot from the car of the Twins (two or three lanes to the left), Trinity's car passes a truck, when the car appears again ahead of the truck there is only the driver inside the car, no passengers.
As Morpheus walks away from the wrecked car, the position of his right hand, clenched with index finger pointing straight downwards, would indicate he is gripping his pistol. Yet in the next cut to a view from behind him his right hand is empty. The pacing of the sequence suggest he wouldn't have had time to holster it, yet we see him produce it from behind his back after he has sliced the twins' car.
In the Burly Brawl scene towards the begining there is a birds-eye shot of Neo fighting four Smiths in front of him while moving backwards. He continues moving backwards and is hit. Just before the shot changes he is standing on a drain but when the shot does change he is about 3 feet in front of it.
In the shot taken above the Twin's right arm just before the SUV smashes the trunk off the BMW we see that Trinity's Cadillac already made a left turn and is about 70 feet away. In the shot made from inside the SUV just after hitting the BMW, the Cadillac is still taking the turn and seems stuck on the sidewalk. The SUV is about to pass it to the left.
When Trinity is on the freeway and sees the motorbike truck from the bridge there are several cars either side of the truck travelling at the same speed. When they jump over,the top down view shows no cars and also the following shot from under the bridge shows no cars.
In the scene when Neo and the counselor Hamann are holding a conversation at night before entering the engineering level, you can see Hamman's robe's neck changing from wrinkled to unwrinkled mainly on the back side between shots.
In the scene where Trinity rides a motorcycle and is being chased by the police, we see the cop cars right behind her, almost nudging her back wheel. From behind her, she dodges a car, which crosses the road line and should stack right into the police car behind it, but escapes miraculously unscathed.
In the scene where Neo meets the Oracle before the Burly Brawl, just after Neo looks at Seraph and says "so's he", from behind she is leaning her head on her hand, with her hand by her jaw. Then when we see her from the front (instant cut, no time she's not visible), her hand is against her temple when she says "keep going".
During the freeway chase when the Agent lands on Trinity's car, the hood buckles and is bent quite a bit. However, when the camera shifts back to the car with the Agent on the hood, there is very little damage visible.
In the fight scene between Seraph and Neo, items on the tables are constantly being knocked off and reappearing. In the first long shot, where Seraph and Neo jump from the rightmost table to the one adjacent, a bottle is knocked off, and then reappears. Almost immediately after, during an overhead shot, Seraph knocks one of the flat ashtray-like containers off the table. He moves back, obscuring the place where it was. When he moves forward again, it's back on the table.
DVD: In the 100 Smiths brawl, Neo dives backwards about four feet from the ground and a Smith dives at him from the ground to Neo's left. The following shot shows both of them at about twenty feet in the air and it looks like they are descending from the fourth floor of the building in the background.
In the scene where Neo converses with the Oracle, there is the shot where Seraph reminds the Oracle that they should leave. Now you see that when the Oracle gets up, Seraph starts checking the area in front of the bench, looking away from Neo and the Oracle. But in the next shot with all three of them in frame, he is looking directly at Neo while the Oracle moves forward to pat Neo in the stomach.
The wound and the sleeve of the jacket on Trinity's arm changes after she's cut by one of the twins. When she's cut, the wound and rip in the jacket are thin and diagonal. As Morpheus is calling Link, the wound is not really visible and the cut in the jacket is now larger and squarer, and has changed direction on her arm.
In the scene where Trinity, Morpheus, and the Keymaker are standing on the bridge, Morpheus says "Trinity, get him out of here." Trinity then grabs the Keymaker and they both jump off of the bridge onto a truck. Then, when the car the twins are riding is heading toward Morpheus, you can see that there are guard rails on both sides of the bridge, however, next when Morpheus cuts the tires on the car the twins are riding with his Katana, the camera cuts a side shot of the bridge, and one side of the guard rails on the bridge has mysteriously disappeared.
At the start of the freeway chase scene when the agent gets out of the police car, there is a far away shot, and if you look at the bridge behind there is a white van that changes positions on the bridge during shots.
In the scene where Link unplugs Morpheus from the Matrix there is a close-up of Link with Morpheus opening his eyes at the bottom of the screen. In the following two shot, Morpheus still has his eyes closed and opens them up moments after he had already has awakened.
During the freeway scene, the Twin shoots a black car directly in front of Trinity's car. He shoots on the hood and then a trail of holes are seen going up the windshield. The next shot is one from inside Trinity's car between Trinity and Morpheus, but no bullet holes are in the car ahead.
DVD version. In the 100 Smiths scene, a woman enters the courtyard and drops a shopping bag. The first shot shows two tomatoes falling out, one hurtling toward the camera out of the shot and a small box falling out of the bag. In the next shot of the ground, you can see several tomatoes and the box is back in the bag.
At the beginning, Agent Smith approaches the metal door. On the wall to one side is the writing "Muz 25", on the other side a wire ends in a light switch. After the fight, Neo kneels in preparation for flight and the light switch has vanished.
When the Keymaker opens the door inside the white corridor near the end, you see in the reflection on the doorknob and it shows the corridor, but it does not have any doors in the reflection and there is a white door behind the Keymaker, which you cannot see otherwise when you look in that direction.
When the operator on the Vigilant is impaled, at first the bar seems to be coming out of his chest horizontally. When they show him again later as the ship explodes it seems to be pointing much higher up.
In the scene where Trinity is driving on the freeway, you can see from the interior shot that her door is locked. In the exterior shot you can see her door is unlocked. This is consistent all the way through the driving sequence.
In the middle of the freeway chase scene when Morpheus is on the overpass, in one shot the twins SUV has already made it round the bend of the overpass. The following shot they are going around the bend again.
In the scene just before the big 100 Agent Smith's fight, we see Neo and the Oracle talking on a bench. In one shot we see that the Oracle has her arm on the bench's back, then in the following shot we see her put her arm down by her side or on her lap, then in the following shot after this its back on the back of the bench.
Near the end of the film when we see the Keymaker open the door and Neo kicks Smith to make a gap, if you look where Neo is, there are two Agent Smith's behind him, they are looking towards Neo's direction and pulling there guns out, yet when the shot changes to a close up, the two Agents are facing one another and then pull there guns again.
In the freeway chase, just after the brown 4x4 flips over, one of the twins is shooting at Trinity's car. In a shot from the front his head's well above the sights, and he's spraying bullets around a bit. From behind him, he's holding it tight into his shoulder and keeping his fire in one place.
In the Burly Brawl, when Neo is getting the pole out of the ground, there is a sign behind him on the wall next to the barred windows, but when Neo jumps and spins with the pole, in the background you see that the sign has vanished.
On the freeway, the rear lights on Trinity's bike are sometimes on and sometimes off. And, no, they're not brake lights because they're on at the start when she is accelerating away from the lorry that is transporting the bikes.
In the car chase scene, when the black car flips, a bullet spark can be seen on Trinity's car. The only thing wrong about this is that the bullet sparks on the windscreen and leaves it undamaged (seen in slow-mo).
During the highway chase scene, when Trinity and the keymaker jump on the motorcycle truck, the bikes change between shots. Viewed from the side, from the front to the rear, there's a red, a black, and then three red bikes. When Trinity calls Link for a driving program, there's now a red, two blacks and two red bikes.
During the Burly Brawl (Neo VS 100 Agent Smith clones), there is a point where dozens more 'clones' burst through the doors of two buildings. In one shot you can see that the number of clones simply ends, and no more are coming after a point (very briefly at the end of one of the first shots), but in the overhead shot shot, there are suddenly more and more Smiths pouring out at a constant rate. There is not even a pause in the Smiths coming out, so it makes no sense.
When Morpheus faces the Twins' car with his katana, there is a shot from the side (the same shot where the side of the bridge disappears) where a part of the highway below is visible. It's completely empty while only seconds before you can see the highway full of cars.
Before the freeway chase and a little bit after they leave the garage, the twins shoot and crash the BMW, then Trinity's car turns right and drives off. In the next shot, the CTS is parked in the corner.
When Morpheus, Neo and Trinity arrive at the Merovingian's, the door keeper says "Follow me". The reflection in Morpheus' glasses shows the man still standing there, but in the next shot he has already started walking away.
When Trinity and the Keymaker are on top of the motorbike truck there is a dark lorry which is seen to be behind the truck in the inside lane. Then in the close-up of the Keymaker when he holds the key up the truck is a lot closer to them.
Right before the car chase when the car exits the garage the parking lights are on. Then it makes a right turn and one of the parking lights is out (The one on the passenger side). The next time you see the front of the car both lights are on.
Right at the beginning of the fight between Morpheus and the Agent on top of the semi-truck, the Agent sends Morpheus sliding to the side of the trailor. In the first shot, Morpheus' left leg is over the edge, but in the next shot, his whole body is on the trailor and he has to turn to get close to the side.
In the freeway scene, Morpheus fights an agent. Right before Morpheus gets knock off onto Niobe's car, you see Morpheus land and lose his balance on the left side of the back of the truck, but when there is a shot of Morpheus falling off the truck, he is falling off the centre.
In the freeway chase scene, when the agent jumps on the intermediate car, it flips over. During the second slow-mo shot of it tumbling end over end, a bent piece of the bumper can be seen to leap UP from the ground, become un-bent, and attach itself back onto the car. This process is also visible for several other small pieces of debris on the road. It is NOT simply broken glass bouncing upwards - the bent bumper reassembles as it leaps up, and small metal shards suddenly go from motionless to flying towards the car. Broken glass moves as it would be expected to: away. It seems that the glass may have been edited in later.
Near the beginning of the freeway chase scene, we see the twins take aim at a gold Chevy SUV. First of all, the first head on view we see of the SUV it has it's Daytime Running Lights on, the next time we see this view they are off. Secondly, one twin shoots out the passenger window and completely shatters it, however after the scene cuts briefly back to the twin it returns to the SUV just as it begins to flip and we see the window shatter yet again.
In the highway scene when Trinity steals the bike from the truck, you can see that the bike's tires are completely clean while the bike is in the air and in the next shot just before the bike touches ground the tires are now all dirty.
When Morpheus rolls out of the way of the Twins' car you can see his smoking, bullet-ridden car in the background. The door's wide open when he rolls, and a split second later when he slashes their car, the door's almost shut. No-one's anywhere near it.
In the freeway chase scene just before the two trucks collide, Morpheus and the Keymaker are at the front of the white truck (you can tell because otherwise you wouldn't be able to see that much of them in the final front shot), but when they're catapulted forward they're right at the back.
In the fight scene in the mansion, when Neo stabs the guy's hand with a sai, his hand is in the top part of it, but when the shot cuts his hand's now a) in the bottom half, and b) free of the sai anyway - he's just gripping the sword which is in the bottom half, with nothing trapping him.
In the scene where Trinity is typing the 'disable grid nodes 21 - 48' command, she is pressing random keys rather than the correct sequence. The text already on the screen in the beginning of the next shot is 'disable grid,' but the 'G' key is one of those that have not been pressed, whereas 'H', for obscure reasons, has been.
Right before the highway chase scene, when the Key maker says, "Always another way", if you look at his head, he has a full head of hair. When Trinity and the Keymaker jump off the bridge onto the motorcycle truck, you can see the Keymaker has a bald spot and a little less hair.
In the scene when Neo is talking to the Oracle on the bench, the Oracle is sucking on a sweet large enough to cause a bulge in her cheek. Whilst they are having the conversation, the camera obviously changes to whoever is talking. Neo gives a short response and then the Oracle replies straight away - no sweet.
Near the middle of the film when Neo, Trinity and Morpheus are talking with the Merovingian, you see that the Merovingian is holding a glass on the table with his right hand, the glass is barely half full/half empty, yet in the following shot the glass has filled itself up a bit.
In the scene where Neo meets the Oracle, when Neo and Seraph are in the corridor with all the back doors, the small piece of wall around the door is white. However, when Seraph opens the door so that he and the Oracle can go through it, the borders of the door opposite to the open one are green.
At the very beginning of the film when the 3 agents burst through the door where the captains are holding the meeting, if you notice the 3 agents enter the room and stop just after the broken door, and when the agent closest to Neo says, "only human," the other two agents are now a lot further in the room, there is no time to move forward as it is between shots this happens.
The door which is held open by one of the Twins gets splattered with blood on the inside when Trinity shoots at his arm. However, when Neo later runs towards the door before bashing it in, the splatter is gone.
When we see Neo stop all the bullets that the Merovingian's henchmen have just fired at him, Neo proceeds to let them drop on the floor where they are clearly visible. Yet just seconds later when all the Merovingian's men come running at him the bullets have all.
When the 2 cops are being morphed into at the beginning of the highway scene, the driver is looking to his right while being morphed, but in the immediate shot, he is looking to his left, there isn't enough time in between shots for him to look the other way.
In the scene right before the freeway scene, in the city streets, the Escalade EXT rams a brown BMW 7-series in the pursuit of the Silver CTS. The BMW rips in half, but there's not a scratch on the EXT. Later in the freeway scene, you see a headlight blown out, and a katana sword can rip it, whereas a car smash causes no damage.
When Neo goes to see the Oracle he first encounters Seraph. In the middle of their fight scene in one shot you can see that Seraph isn't wearing his sunglasses despite in all other shots wearing them. (Easier to view in slow motion)
At the beginning of the film when we see the motorbike come off from the top of the parking lot, in the overhead shot we see Trinity jump off and land after the two lamp-posts. In the following shot when she lands, she lands before the lamp-posts.
When the Merovingian's henchmen are shooting at Neo, a shot is shown from the side to show everyone firing their weapons. The man on the far left (the closest) makes the arm movements to indicate that his weapon is firing continuously, but his gun is only seen firing once.
In the car chase scene, just before they go onto the freeway, the twins fire a machine gun at them and make quite prominent dents on the top of the car. However, in the scenes that follow, the bullet holes are not there. This is most obvious when you see the car from the top and the black car next to it crashes into a barrier. They come back when an agent lands on the top of the car and rips it off.
Right before the Twin enters Trinity's car, he shoots a black car in front of them and then continues firing on Trinity and Morpheus. However, when the car is seen flipping in slow-motion, you can see bullets hit on the hood of Trinity's car up to the windshield and then instantaneously go to the roof.
At the start of the Burly Brawl when we see Smith throw Neo through a bench, when Smith goes up to jump on him, from this point of view, the two or three steps behind the bench are nowhere to be seen, yet when Smith lands on the ground, the steps are probably less than a foot away from the bench.
At the beginning of the big chase scene we see Trinity, Morpheus and the Keymaker in a car going down a street. If you look out the front in one of the shots, they are nearly at the end of the street. A few seconds later they are approaching the end of the street again.
In the freeway chase scene when the Cadillac is being side-smashed by the police cruiser, the agent driving the cruiser disappears from the car when the vehicle hits the water barriers. It can't just be that he changed to a different body - that would have left the original occupant still in the car.
When Trinity is driving through the tunnel leading up to the highway, the action goes into slow motion and Morpheus shoots out the Albino Twins' Escalade SUV driver side mirror to pieces. In the scene where one of the Albino Twins morphs back inside the Escalade SUV on the highway, in which they say "We are getting aggravated", "Yes we are", you see the full driver side mirror intact. It is gone again in the next scenes showing the driver side mirror.
In the freeway chase scene, look carefully at the Ducati carrier truck. After the truck's driver's body is taken over by one of the Agents and the camera shows the outside of the truck, you can see that it is a completely different truck, carrying a red shipping container instead of the motorbikes.
In the freeway chase, Agent Johnson jumps from an overpass onto the top of the truck carrying Morpheus and the Keymaker . Just before the truck goes beneath the overpass, a freeway distances sign (Whipple Ave ½, Woodside Rd 1-½, Marsh Road 3-¾) is briefly visible. As the truck emerges on the other side, the same sign appears again, behind Johnson, to the right.
In the tunnel scene to the freeway, the human police officers are driving a Chevrolet Caprice made prior to the 1994 model, from the next scenes, it appears to be a 1993 model with mirrors from a 1995 or later model. The Agents also are seen in this same car. Then the next interior scene of the Agent's police car shows then driving a 1994 or later model. The brief scene of the Agents following the Cadillac when the Twin is fighting in the car, shows the Agents driving a 1994 Caprice with side mirrors of the 1995 or later model years. Then when the Agent exits the Caprice to get on the roof, it is a 1995 or later model with the Impala style rear quarter window. When the Agent is firing at and bumping the Cadillac, the Caprice is a 1993 model with the mirrors of the 1995 or later years. Then the Caprice that crashes into the cushion barrels is a 1995 or later model.
During the freeway chase there is a shot over the shoulder of one of the twins as he shoots at our hero's car. He rakes his stream of bullets from left to right following the car as it passes behind a white van, but there are already bullet holes in the van *before* the stream of bullets ever reaches it.
When Agent Johnson and Morpheus are fighting on top of the truck and Johnson hits Morpheus so does a huge back flip and at that moment a car passes the truck and on the back window of the car you can see the reflection of an exit sign, Morpheus completes his back flip and he is about to loose his balance, at that moment we see no exit sign for "miles".
One twin fires at a gold Chevy Tahoe that has come between his vehicle and Trinity's Cadillac. As we cut away, no shots have hit the roof of the Tahoe. When we cut to the front view of the car turning over, it has fifteen bullet holes in five neat rows in the roof which can not have appeared during the brief close-up of the gunman between the two shots.
During the Agent Thompson/Morpheus fight on top of the semi trailer, there are multiple shots in which the Keymaker should be visible but is not. The most noticeable is when Thompson flips Morpheus in the air and he lands on his hands at the edge of the semi trailer.
During the highway chase, Morpheus lands on the hood/windshield of the Firebird driven by Niobe. As he lands, the windshield cracks noticeably. During the time she whips out around the semi and pulls right in front of it, the cracks disappear and reappear.
In the highway scene when Trinity is driving the Cadillac in the shoulder, agents try to ram her car, smashing the left rear view mirror. Moments later the agent is seen doing the exact same action and the left rear view mirror crumples again.
In the car chase scene with the twins, right when the gold Tahoe gets between Trinity and the twins, a sign can be seen saying that Paterson Pass is 1/2 mile away, in the opposite direction. This sign is visible looking from the front of the car to the back. When they force the squad car into the water barrels and get off the highway, it is at Paterson Pass and they have not turned around.
During the freeway scenes, the katana Morpheus used as a foot hold to grab the keymaker keeps moving. It was at arm's length from the top when he inserted it; when Morpheus was standing on it, the sword was a whole body length below the top; when Morpheus took the sword out in his fight against the agent, it was back in its original position.
In the highway chase scene there is a shot of the police cars before they get onto the highway and the cars are Chevrolet Caprices. When they are on the highway chasing Trinity's car, the police cars become brand new Chevrolet Impalas. But when the police cars start to ram her, they become Caprices again.
During the car chase, the twins shoot out most of the windows in the car that Trinity and Morpheus are driving in. But when seen from the inside of the car, the windows are intact and there is no shattered glass to be seen.
When Neo meets the Oracle and she hands him a candy, she holds it out with the candy held between her fore- and middle fingers. When the camera shifts it is cradled in her palm, and then back to between her fingers.
In the Chateau fight scene, when the Merovignian's henchmen line up to shoot Neo, there are clearly six of them. However, during the ensuing brawl, only five are killed on-screen (head smashed with spiky flail, stabbed while sword fighting Neo at the top of the chateau, accidentally stabbed by the guy with the trident, accidentally smashed by the guy in white's mace, and head smashed by Neo after being disarmed) and the body of the sixth henchman is no where to be seen.
After Agent Johnson slams onto the hood of a car in the highway chase sequence and the car makes a forward pitch-flip, another car behind it (screen right) makes a left roll-flip, ostensibly because of the collision with the first car. Just to screen-right of the pitch-flip car and under the right tire of the roll-flip car, the black ramp it rides on that causes its right side to lift can be seen.
During the highway chase when the agent smashes the car by jumping on the hood, the shot switches to inside the vehicle being driven by the twins. The vehicle is being driven on the right shoulder of the highway where it is completely free of traffic and no crashing vehicles are in the lane or even moving toward the lane. Yet the driver swerves into the lanes where the other vehicles are crashing.
At the end of the 100-Smith fight, the Smiths are standing in a circle around Neo as he flies away but in the close of Smith Prime, none of them are in the reflection in his glasses. In fact, none of the glasses have any Smith reflections in them.
After the Nebuchadnezzar enters to Zion for the first time, Neo, Trinity, Link and the Boy are walking through the deck. Neo's head connector is missing in several close shots of the back of his head. It is later seen that Neo's head connector is hidden beneath his hair, rather than visible from the back.
Agents can overtake anyone's body except those enter The Matrix from outside. On the highway chase scene, agents prefer to overtake the body of cops which are way behind during chase. Instead they could have overtake any car's driver which is just next to or in front of the car the trio escapes.
Before Neo enters the door that leads to the Source, the Keymaker says he can't fly to the center of the grid in 5 minutes, but after that Neo saves Trinity flying to that exact same place, which he does in a few seconds.
During Neo's meeting with the Oracle, she says very early on "I know you're not sleeping. We'll get to that," and then doesn't return to the subject before the conversation is over. Which kind of puts the Oracle's predictions in some doubt if she can't even predict what she's going to speak about in a short conversation.
Morpheus has 36 hours to recharge his ship. Until then, Ballard will wait for a signal from the Oracle in his place. Since Morpheus can't leave Zion before 36 hours and Ballard can't give news from the Oracle before that time too, it makes no sense that everybody starts moving because Ballard at last brought this signal.
During the highway chase/fight scene, the traffic is moving toward the camera but there is a "Speed Limit 65" sign also facing toward the camera, revealing that ALL the traffic is moving the wrong way on the highway.
In the Burly Brawl, near the beginning, Neo throws a kick at an Agent Smith Clone and the camera follows it horizontally as it flies into another clone before colliding. The first Agent Smith flies off while the one it collides into flips towards the ground. Viewing in slow motion, the prosthetic wig on the actor flies off and stays attached to his head, comes on, and flies off before finally coming on as he hits the ground. Better visible in slow motion, but at another scene after this one, you can also see many of the wigs fly off the actors as they fly back.
In the scene where Neo is fighting the 100 Smiths, there's a shot of Neo baseball-smacking a Smith into a set of windows. While the scene is a bit blurry, it's pretty apparent that the Smith literally falls apart when he hits the window, like he was made of sausage links.
After Morpheus gives his speech in Zion and the music starts Neo is waiting for Trinity. When he moves off to meet her in the background two people are passing and a woman is knocked against the 'rock' wall which wobbles with the impact.
In the freeway chase scene when one of the agents jumps onto the hood of the first car then jumps off, the car flips, then a second later as the car is still flipping you can see the gas tank and transmission have been removed.
In the 100 Agent Smith fight, you can see (especially in the larger shots) that there are many Smiths that don't look like Smith at all. Also, for the ones that have Smiths face digitally painted on them, when they turn around you can see that the backs of their heads are all different.
One more of the Burly Brawl. After Neo is thrown over the park chair and this is broken, count five shots starting with the close up of Neo face, you will see in the end of the fifth one, how an agent loses his wig.
In the office building, when Trinity runs and jumps out the window, she seems to pull the Uzis out of nowhere. She is wearing a skintight leather jumpsuit, and previous shots show her not holding anything and with nothing attached to her.
During the beginning of the freeway chase scene, a "Maximum Speed 65" sign can be seen along the freeway wall in the slow lane that is facing the opposite direction of traffic. Freeway traffic in that lane would only be able to see it in their rear-view mirrors.
After Neo has knocked out the first two agents after the meeting scene, he kicks the last one into the pole of a streetlight. When the agent falls to the ground, he moves his arms from a position where he could brace his fall to one where he could protect his face from the shattered glass that comes directly after when the glass from the streetlight falls and breaks in front of him.
During the fight against the Frenchman's men, at one point a giant stone statue is broken, falls over and smashes apart. You see it hits a stone railing on the stairway, which wobbles and makes it very clear that the statue is a breakaway, unlike the rest of the set.
When Neo fights the Agents near the beginning, he knocks out the first by knocking him into the wall. He then knocks the second into the wall by spinning round on the third Agent's back. After the shot of the second Agent hitting the wall both Neo and the Agent go from standing completely still displaying a clear "Action" cue.
In the highway chase scene, Trinity, Morpheus, and the Keymaker pull off onto an exit and the twins follow. If you look closely at the exit and the overpass, you can see that it ends after it goes over the highway. The exit/overpass goes nowhere. You can see this during the various shots when Morpheus faces off against the twins and later when Trinity looks back at the overpass from on top of the Ducati carrier.
In the freeway chase scene, the black car that gets shot at by one of the twins and flips over the k rail and over the Cadillac has skid plates under the nose, so as to slide and flip the k rails easier.
During the freeway chase there is a shot over the shoulder of one of the twins as he shoots at our hero's car. He rakes his stream of bullets from left to right following the car as it passes behind a white truck - notice, however, that there are already bullet holes in the truck before the stream of bullets ever reaches it.
In the freeway chase scene, look carefully at the interior of the cars that get flipped over by the Agents and the Twins. All of them are completely empty, meaning that either they are remotely controlled or they are simply towed by a hidden vehicle. This is most obvious when they are flipping in slow-motion.
In the Burly Brawl scene, as the many Smiths dog-pile Neo, the shots cut from a wide angle of the dog-pile, to the close up of Smith speaking to Neo. The green-tinted lighting in the close up shots reveal them to be live-action, while the wide angle shots are of a normal tint and obviously computer animated.
In the highway chase scene, when the agent leapfrogs onto the hood of a moving vehicle (which crushes into the ground in slow motion), you can see that the only light source is the sun, which is perpendicular to the highway (low and off to the right), and all objects in the scene are casting long shadows only to the left. The agent casts his long left shadow (which extends from the edge of the car's shadow as he lands on it), but also casts a second shadow just below and behind him directly on the car's hood. He is the only object in the scene that casts a downward shadow.
On the highway chase scene, after the agent jumps onto a car and then onto another car, the first car flips over and goes in slow motion you can see the roll bars and other equipment in the car, also there is no driver.
After Neo takes the pole for the fight with the Smiths, we have some "bullet-time" shots of Neo fighting with the pole. In those shots we can see that Neo and the pole are computer made. This becomes even more obvious because before using the pole Neo was crushed into a wall and got all dirty and the computer-made Neo is completely clean.
Just as Neo begins fighting in the "Burly Brawl," take a look at the Smith to the right of him (he puts his hand on Neo's shoulder I think). The face is not Hugo Weaving's but the face of the stunt person. Looks like the effects crew forgot to put Weaving's face on that guy.
After the twins shoot the black Oldsmobile, it hits a barrier and does a spiral, and lands on its roof. That's impossible because the car's fender would have been torn off. It would have skidded a sharp right and went under the semi that Trinity was driving by. That indicates that there was a ramp to lift the car off the ground and do the spiral.
When the Keymaker closes the door with the Smiths firing at him, if you play it slowly you can see that no bullets actually hit him, as they would have caused bullet holes and blood stains, but his shirt stays perfectly fine right up to when he shuts the door.
When one of the twins is chasing trinity, Morpheus and the key maker, the twin's arm gets caught in the door and his arm gets shot, then when the door is let go, he heals his bloody arm, but it is bloody on his other arm.
In the highway chase scene an agent leapfrogs onto the hood of a moving vehicle which crushes into the ground and flips over in slow motion. As the car flips it can be clearly seen that it's drive train and gas tank are missing.